The tree is drawn using ggraph with its dendrogram layout. When
customising it, you may wish to add layers such as
ggraph::geom_node_point().
The metadata table is joined onto the tree, so all its column names are
available for use in the various ggraph geoms.
Arguments
- phylepic
object of class "phylepic".
- label
variable in metadata table corresponding to the tip labels (tidy-eval).
- bootstrap
when
TRUE, draw bootstrap vaues on the tree. These are only drawn if they are detected from the node labels having the form "a/b" where both "a" and "b" are numbers. Currently, the bootstrap values are displayed as a percentage, suppressing zero values and values for very short branches. To customise the appearance or details instead usebootstrap = FALSEand add your own layer with ggraph::geom_edge_elbow.
Value
If phylepic is specified returns a ggplot, otherwise a function
that when passed a "phylepic" object produces a ggplot for use with
plot.phylepic().
See also
Other phylepic plots:
plot.phylepic(),
plot_bars(),
plot_calendar(),
plot_epicurve()